NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193756_1008019

Scaffold Ga0193756_1008019


Overview

Basic Information
Taxon OID3300019866 Open in IMG/M
Scaffold IDGa0193756_1008019 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9765Long. (o)-107.0043Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040820Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0193756_10080192F040820N/ALLGIALAACGGAAPASKAAYPESGLVLLSIKDGTQRSSASIGKDPVAVIVSDDGRTAYLADSAPGDVYAVSLPNLPIAWKQHVGGAPFGLLLHGGRLLVSLFSGASVVELDPKTGNMMGMHQVPQGPGAMATDTSGRVVVAGTRGQLTTIDGGQVAAGNGFGVALAGGHIWTADYERAELVPAGDDHRVGLPLPLFPFWLATGAGDTLLIAAEGAVEDSDPGGVFSFDPVNSAFKILATPKDPDLVLQSGSMILVAAHGDGQVLVLQDDHSSTWARGSAPVALATSDALGLLVVAVNAHE

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